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Home2003February

Month: February 2003

TechConnect Proceedings Papers

PCR Micro-Voume Device for Detection of Nucleic Acids

Auroux P-A, Day P., Manz A., Niggli F., Kinderspital, CH
The polymerase chain reaction (PCR) is an enzyme-mediated nucleic acid amplifer process that is employed extensively throughout the medical and biological sciences. The technique has risen to acclaim largely through its exquisite sensitivity, but an [...]

Molecular Recognition on Demand

Marshall D., Prudent J.R., Richmond C., Scherrer C., Sherrill C., EraGen Bioscience, Inc., US
DNA is the only chemistry that allows for ?molecular recognition on demand?. That is, unlike any other molecular recognition chemistry, DNA allows for the simple design and rapid synthesis of molecule sets that will recognize [...]

Nanoscale Bio-Molecular Control Using EC-OWLS

Bearinger J.P., Hubbell J.A., Spencer N.D., Textor M., Vörös J., ETH Zürich/ Lawrence Livermore National Laboratory, US
A new technique has been developed that combines evanescent-field optical sensing with electrochemical control of surface adsorption processes. This technique, termed Electrochemical Optical Waveguide Lightmode Spectroscopy (EC-OWLS), proved efficient in monitoring molecular surface adsorption and [...]

Stochastic Tunneling Method for High Throughput Database Screening

Burghardt B., Merlitz H., Wenzel W., Forschungszentrum Karlsruhe, DE
Virtual screeing of large databases of chemical compounds against known structurally resolved protein receptors emerges as a promising route for lead discovery in drug design. In this approach each ligand of the database is aligned [...]

Freeze-fracture Electron Microscopy on Nanostructures for Drug & Gene Delivery

Papahadjopoulos-Sternberg B., NanoAnalytical Laboratory, US
The potency of drug/gene-loaded carriers is frequently depending upon their morphology adopted in a biological relevant environment. Freeze-fracture electron microscopy/1/ is not only a powerful technique to characterize drug/gene carrier on a nanometer resolution scale/2,4-11/ [...]

Replica Exchange Molecular Dynamics Toolkit for Drug-receptor Docking

Ito M., Nagashima U., Nishikawa T., National Institute of Advanced Industrial Science and Technology, JP
In this post-genomic era, much attention is focused on the 3D structure and flexibility of protein molecules for the rational drug design. Although the structure information provides a good starting point for estimating the ligand-protein [...]

CONFLEX: Conformational Behaviors of Polypeptides as Predicted by a Conformational Space Search

Goto H., Nagashima U., Ohta K., Takahashi T., Takata Y., Toyohashi University of Technology, JP
The elucidation of the stable conformations and the folding process of proteins is one of the most fundamental and challenging goals in life science. While some of the most common secondary structures (e.g., a few [...]

cDNA Microarray Data Based Classification of Cancers Using Neural Networks and Genetic Algorithms

Cho H.S., Jeon S.M., Kim T.S., Lee C.H., Wee J.W., Catholic Univ. of Korea, KR
In this paper, we developed intelligent gene selection and cancer classification method using genetic algorithms and neural networks. To select valid genes from gene expression data set, genetic algorithms were applied and neural networks were [...]

A Computational Efficient Algorithm for Protein Sequence Classification

Li Y., Lu H-M., National Nano Device Laboratories and National Chiao Tung University, TW
The protein sequence analysis has been of great interests recently. Through the protein data bank, a protein sequence is easy obtained and ready analyzed for various studies and applications. Conventional neural network and genetic algorithm [...]

Syntenic Reconstruction of Microbial Chromosomal Mutations

Cutler R., Gambis A., Bard College, US
In this paper, we propose a method to reconstruct the evolutionary history of chromosomal modifications between groups of related species using conservation of synteny. Starting from the most closely related species, as defined by the [...]

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