Barjis I. – TechConnect Briefs

Conditional Probabilistic Modeling of Carbohydrate Metabolism

Barjis I., Sierra M., New York City College of Technology, US

The ongoing processes of metabolic network are very complex, and consequently, difficult to understand and teach; furthermore, it is impossible to predict and analyze it when unpredictable changes are made. Because of the complexity of [...]

Modeling of Cellular Communication

Barjis I., Barjis J., Samarrai W., Augustin I., Barjis I., Barjis J., New York City College of Technology, US

This paper introduces application of Rule based to molecular biology. In particular, it illustrates how by means of rule based the process of cellular communication can be modeled, and analyzed, where the model could be [...]

Computer Model of Cancer Development

Barjis I., Barjis J., Sayar M., Barjis I., Barjis J., Amarrai W., New York City College of Technology, US

Cancer development is a very complex process. Wide range of factors could contribute to the development of cancer. Factor that can lead to the development of cancer can range from oxygen free radicals to micronutrient [...]

Systems Biology Conceptual Modeling by Means of Discrete-event Simulation (DNA-RNA-Protein)

Yeol J.W., Barjis I., Barjis J., Barjis I., Barjis J., Berri S., Ryu Y., Polytechnic University, US

In this paper discrete-event simulation modeling technique is used to model and simulate biological processes. In particular, we study application of discrete-event simulation to model processes taking place in Glycolosis and capture dynamic behavior of [...]

Modeling and Simulation of Carbohydrate Metabolism using Petri Net

Barjis I., Barjis J., Yoel J.W, Barjis I., Barjis J., Berri S., Ru Y.S., Polytechnic University, US

In this paper Petri net modeling technique is used to model and simulate biological processes. In particular, we study application of Petri nets to model processes taking place in Glycolosis and capture dynamic behavior of [...]

Modeling of Cellular Communication by Means of Petrinets

Barjis I., Barjis J., Berri S., Barjis I., Barjis J., New York City College of Technology, The City University of New Tork, US

This paper introduces application of Petri nets to molecular biology. In particular, it illustrates how by means of Petri nets the process of cellular communication can be modeled, and analyzed, where the model could be [...]

Boolean Networks (BN) Based Molecular Biology Modeling: Protein Process

Yeol J.W., Barjis I., Barjis J., Barjis I., Barjis J., Berri S., Ryu Y., Polytechnic University, US

In this paper, we introduce a new application of modeling tool; Boolean Networks (BN). In particular, it shows how, by means of a Boolean Networks (BN), the protein production process can be modeled and analyzed. [...]